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Project results originating from DFG-funded projects must be made available to the general public in an appropriate manner. Publications must contain the following reference to the DFG funding:

„Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – SFB1535 - Project ID 458090666"


Publications

Heinen, M., Rövenich, H., & Altegoer, F. (2025). The rise of fungal G-protein coupled receptors in pathogenesis and symbiosis. Plos Pathogens

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Dali, S., Schultz, M., Köster, M., Kamel, M., Busch, M., Steinchen, W., Haensch, S., Papadopoulos, A., Reiners, J., Smits, S. H. J., Kedrov, A., Altegoer, F., & Schipper, K. (2025). Specific phosphoinositide interaction of Jps1 is a key feature during unconventional secretion in Ustilago maydis. Journal of Biological Chemistry

DOI

Kröninger, L., Maurya, A. K., Stiebeling, C., Stirba, F. P., Kim, Z., & Nowack, E. C. M. (2025). T7 RNA polymerase-based gene expression from a transcriptionally silent rDNA spacer in the endosymbiont-harboring trypanosomatid Angomonas deanei. PLoS One

PubMed | DOI | ARC

Krüger, A., Weber, U., & Frunzke, J. (2025). Genome-Wide Analysis of DtxR and HrrA Regulons Reveals Novel Targets and a High Level of Interconnectivity Between Iron and Heme Regulatory Networks in Corynebacterium glutamicum. Mol Microbiol.

PubMed | DOI | ARC

Witting, L., Seiffarth, J., Stute, B., Schulze, T., Hofer, J. M., Noh, K., Eisenhut, M., Weber, A. P. M., von Lieres, E., & Kohlheyer, D. (2025). A microfluidic system for the cultivation of cyanobacteria with precise light intensity and CO(2) control: enabling growth data acquisition at single-cell resolution. Lab Chip.

PubMed | DOI | ARC

Eremina, A., Schwall, C., Saez, T., Witting, L., Kohlheyer, D., Martins, B. M. C., Thomas, P., & Locke, J. C. W. (2025). Environmental and molecular noise buffering by the cyanobacterial clock in individual cells. Nat Commun, 16, 3566.

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Kasahara, K., Seiffarth, J., Stute, B., von Lieres, E., Drepper, T., Noh, K., & Kohlheyer, D. (2025). Unveiling microbial single-cell growth dynamics under rapid periodic oxygen oscillations. Lab Chip.

PubMed | DOI 

Knapp, F., Hogenkamp, F., Paik, S. H., Jaeger, K. E., Pietruszka, J., & Drepper, T. (2025). Synthesis and Application of Photocaged Isopropyl beta-D-1-Thiogalactopyranoside for Light-Mediated Control of Bacterial Gene Expression. Methods Mol Biol

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Zweng, S., Mendoza-Rojas, G., Lepak, A., & Altegoer, F. (2025). Simplifying Recombinant Protein Production: Combining Golden Gate Cloning with a Standardized Protein Purification Scheme. Methods Mol Biol

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Mager, M., Becker, L., Schulten, N., Fraune, S., & Axmann, I. M. (2025). Oligonucleotide library assisted sequence mining reveals promoter sequences with distinct temporal expression dynamics for applications in Curvibacter sp. AEP1-3. Synthetic Biology

BioRixv

Stephens, T. G., Van Etten, J., McDermott, T., Christian, W., Chaverra, M., Gurney, J., Lee, Y., Kim, H., Cho, C. H., Chovancek, E., Westhoff, P., Otte, A., Northen, T. R., Bowen, B. P., Louie, K. B., Barry, K., Grigoriev, I. V., Mock, T., Liu, S. L., Miyagishima, S. Y., Yoshinaga, M., Weber, A. P. M., Yoon, H. S., & Bhattacharya, D. (2024). Temporal dynamics in a red alga dominated geothermal feature in Yellowstone National Park. ISME Commun, 4, ycae151

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Sorensen, M. E. S., Stiller, M. L., Kröninger, L., & Nowack, E. C. M. (2024). Protein import into bacterial endosymbionts and evolving organelles. Febs Journal.

DOI

Beyer, H. M., Kumar, S., Nieke, M., Diehl, C. M. C., Tang, K., Shumka, S., Koh, C. S., Fleck, C., Davies, J. A., Khammash, M., & Zurbriggen, M. D. (2024). Genetically-stable engineered optogenetic gene switches modulate spatial cell morphogenesis in two- and three-dimensional tissue cultures. Nat Commun

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Laker, B., Schulze, T., Reis, M., Bormann, S. M., Radke, G., Klages, L. J., Busche, T., Wobbe, L., Bräutigam, A., & Eisenhut, M. (2024). Circularly assembled genome sequences of Asticcacaulis sp. strain MM231 and Brevundimonas subvibrioides MM232, isolated from a pond at Bielefeld University campus. Microbiol Resour Announc.

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Devan, S. K., Shanmugasundaram, S., Müntjes, K., Postma, J., Smits, S. H. J., Altegoer, F., & Feldbrügge, M. (2024). Deciphering the RNA-binding protein network during endosomal mRNA transport. Proc Natl Acad Sci U S A

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Krüger, A., Göddecke, J., Osthege, M., Navratil, L., Weber, U., Oldiges, M., & Frunzke, J. (2024). Biosensor-based growth-coupling as an evolutionary strategy to improve heme export in Corynebacterium glutamicum. Microb Cell Fact.

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Mostafa, F., Krüger, A., Nies, T., Frunzke, J., Schipper, K., & Matuszyńska, A. (2024). Microbial markets: socio-economic perspective in studying microbial communities. microLife.

DOI

Kever, L., Zhang, Q., Hardy, A., Westhoff, P., Yu, Y., & Frunzke, J. (2024). Resistance against aminoglycoside antibiotics via drug or target modification enables community-wide antiphage defense. microLife.

DOI

Matuszyńska, A., Ebenhöh, O., Zurbriggen, M. D., Ducat, D. C., & Axmann, I. M. (2024). A new era of synthetic biology-microbial community design. Synth Biol (Oxf), 9

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Erdrich, S. H., Schurr, U., Frunzke, J., & Arsova, B. (2024). Seed coating with phages for sustainable plant biocontrol of plant pathogens and influence of the seed coat mucilage. Microb Biotechnol, 17, e14507.

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Ebenhöh, O., Ebeling, J., Meyer, R., Pohlkotte, F., & Nies, T. (2024). Microbial Pathway Thermodynamics: Stoichiometric Models Unveil Anabolic and Catabolic Processes. Life (Basel), 14.

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Eisenhut, M., Schulze, T., Matten, F. N. J., Sengewald, A., Böhner, P., Falk, D., Klinge, C. V., Langschwager, R., Lohoff, S., Meyer, N., Ponomarchuk, V., Punter, F., Sherlock, J., Pschik, D., Klages, L. J., Busche, T., Wobbe, L., Bräutigam, A., & Laker, B. (2024). Complete genome sequences of Chitinophaga sp. strain MM2321 and Microbacterium sp. strain MM2322, isolated from a sand sample in Harsewinkel, Germany. Microbiol Resour Announc.

DOI

Erdrich, S. H., Luthe, T., Kever, L., Roigé, B. B., Arsova, B., Davoudi, E., & Frunzke, J. (2024). Expanding the Phage Galaxy: Isolation and Characterization of Five Novel Siphoviruses Ankus, Byblos, DekoNeimoidia, Mandalore, and Naboo. Phage-Therapy Applications and Research

DOI

Kondadi, A. K., & Reichert, A. S. (2024). Mitochondrial Dynamics at Different Levels: From Cristae Dynamics to Interorganellar Cross Talk. Annu Rev Biophys.

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Kumar, S., Beyer, H. M., Chen, M., Zurbriggen, M. D., & Khammash, M. (2024). Image-guided optogenetic spatiotemporal tissue patterning using muPatternScope. Nat Commun

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Sankaranarayanan, S., Kwon, S., Heimel, K., Feldbrügge, M. (2023) The RNA world of fungal pathogens. PLoS Pathog 19(11): e1011762

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Kuckla, D. A., Brand, J.-S., Czech, B., Asharion, A., Jüttner J. V., Novoselova, I., Neusch, A.,  Hagemann, P., Getzlaff, M. and Monzel, C. (2023) An efficient magnetothermal actuation setup for fast heating/cooling cycles or long-term induction heating of different magnetic nanoparticle classes. J. Phys. D: Appl. Phys. 56 (2023) 505002 (14pp)

DOI

Kohm, K., Jalomo-Khayrova, E., Krüger, A., Basu, S., Steinchen, W., Bange, G., Frunzke, J., Hertel, R., Commichau, F. M., & Czech, L. (2023). Structural and functional characterization of MrpR, the master repressor of the Bacillus subtilis prophage SPbeta. Nucleic Acids Res.

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Sankaranarayanan, S., Haag, C., Petzsch, P., Köhrer, K., Matuszyńska, A., Zarnack, K., & Feldbrügge, M. (2023). The mRNA stability factor Khd4 defines a specific mRNA regulon for membrane trafficking in the pathogen Ustilago maydis. Proc Natl Acad Sci U S A, 120, e2301731120.

PubMed | DOI | ARC

Bitzenhofer, N. L., Höfel, C., Thies, S., Weiler, A. J., Eberlein, C., Heipieper, H. J., Batra-Safferling, R., Sundermeyer, P., Heidler, T., Sachse, C., Busche, T., Kalinowski, J., Belthle, T., Drepper, T., Jaeger, K. E., & Loeschcke, A. (2023). Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesis. Microb Biotechnol.

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Immelmann, R., Gawenda, N., Vicente Ramírez, V., & Pauly, M. (2023). Identification of a xyloglucan beta-xylopyranosyltransferase from Vaccinium corymbosum. Plan Direct, Volume 7e514.

DOI

Molinari, P. E., Krapp, A. R., Weiner, A., Beyer, H. M., Kondadi, A. K., Blomeier, T., López, M., Bustos-Sanmamed, P., Tevere, E., Weber, W., Reichert, A. S., Calcaterra, N. B., Beller, M., Carrillo, N., & Zurbriggen, M. D. (2023). NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems. Nat Commun, 14, 3277.

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Heucken, N., Tang, K., Husemann, L., Hessler, N., Müntjes, K., Feldbrügge, M., Göhre, V., & Zurbriggen, M. D. (2023). Engineering and Implementation of Synthetic Molecular Tools in the Basidiomycete Fungus Ustilago maydis. J Fungi (Basel), 9.

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Weiland, P., Dempwolff, F., Steinchen, W., Freibert, S. A., Tian, H., Glatter, T., Martin, R., Thomma, B., Bange, G., & Altegoer, F. (2023). Structural and functional analysis of the cerato-platanin-like protein Cpl1 suggests diverging functions in smut fungi. Mol Plant Pathol, 24, 768-787.

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Luthe, T., Kever, L., Thormann, K., & Frunzke, J. (2023). Bacterial multicellular behavior in antiviral defense. Curr Opin Microbiol, 74, 102314.

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Maor-Landaw, K., Eisenhut, M., Tortorelli, G., van de Meene, A., Kurz, S., Segal, G., van Oppen, M. J. H., Weber, A. P. M., & McFadden, G. I. (2023). A candidate transporter allowing symbiotic dinoflagellates to feed their coral hosts. ISME Commun, 3, 7.

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Jang, J., Tang, K., Youn, J., McDonald, S., Beyer, H. M., Zurbriggen, M. D., Uppalapati, M., & Woolley, G. A. (2023). Engineering of bidirectional, cyanobacteriochrome-based light-inducible dimers (BICYCL)s. Nat Methods

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